IL_7NWH_136

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

7NWH|1|5|U|4634, 7NWH|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_136 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2956

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7NWH|1|5|U|4632
7NWH|1|5|G|4633
7NWH|1|5|U|4634
7NWH|1|5|A|4635
7NWH|1|5|U|4636
7NWH|1|5|G|4637
*
7NWH|1|5|C|4662
7NWH|1|5|G|4663
7NWH|1|5|A|4664
7NWH|1|5|A|4665
7NWH|1|5|G|4666

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain B

uL3

Chain W

60S ribosomal protein L24-like protein

Chain d

eL31