IL_7NWH_143

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_143 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2927

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7NWH|1|5|U|4885
7NWH|1|5|C|4886
7NWH|1|5|C|4887
7NWH|1|5|C|4888
*
7NWH|1|5|G|4931
7NWH|1|5|U|4932
7NWH|1|5|C|4933
7NWH|1|5|A|4934

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

Ribosomal protein L14