IL_7NWH_168

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UACGCA*UGAAA

Length

11 nucleotides

Bulged bases

7NWH|1|9|C|65, 7NWH|1|9|C|67

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_168 not in the Motif Atlas

Homologous match to IL_4V88_390

Geometric discrepancy: 0.2479

The information below is about IL_4V88_390

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87517.1

Basepair signature

cWW-L-R-L-R-tHS-L-cWW

Number of instances in this motif group

2

Unit IDs

7NWH|1|9|U|63
7NWH|1|9|A|64
7NWH|1|9|C|65
7NWH|1|9|G|66
7NWH|1|9|C|67
7NWH|1|9|A|68
*
7NWH|1|9|U|81
7NWH|1|9|G|82
7NWH|1|9|A|83
7NWH|1|9|A|84
7NWH|1|9|A|85

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain W

60S ribosomal protein L24-like protein

Chain YY

40S ribosomal protein S24