IL_7NWH_209

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

7NWH|1|9|U|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_209 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.2452

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7NWH|1|9|G|925
7NWH|1|9|A|926
7NWH|1|9|C|927
*
7NWH|1|9|G|1014
7NWH|1|9|U|1015
7NWH|1|9|U|1016
7NWH|1|9|U|1017

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain NN

ribosomal protein uS15

Chain bb

40S ribosomal protein S27