IL_7NWH_219

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_219 not in the Motif Atlas

Geometric match to IL_7RQB_032

Geometric discrepancy: 0.2194

The information below is about IL_7RQB_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7NWH|1|9|G|1108
7NWH|1|9|C|1109
7NWH|1|9|G|1110
*
7NWH|1|9|C|1123
7NWH|1|9|C|1124

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain AA

40S_SA_C domain-containing protein

Chain BB

40S ribosomal protein S3a

Chain RR

40S ribosomal protein S17