IL_7NWH_220

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_220 not in the Motif Atlas

Geometric match to IL_6CZR_364

Geometric discrepancy: 0.1617

The information below is about IL_6CZR_364

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7NWH|1|9|G|1168
7NWH|1|9|G|1169
7NWH|1|9|A|1170
7NWH|1|9|G|1171
7NWH|1|9|U|1172
7NWH|1|9|A|1173
7NWH|1|9|U|1174
7NWH|1|9|G|1175
*
7NWH|1|9|U|1186
7NWH|1|9|G|1187
7NWH|1|9|A|1188
7NWH|1|9|A|1189
7NWH|1|9|A|1190
7NWH|1|9|C|1191

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain XX

40S ribosomal protein uS12

Chain n

60s ribosomal protein l41