IL_7NWH_234
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_234 not in the Motif Atlas
- Homologous match to IL_4V88_453
- Geometric discrepancy: 0.1428
- The information below is about IL_4V88_453
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.1
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7NWH|1|9|U|1347
7NWH|1|9|G|1348
7NWH|1|9|G|1349
*
7NWH|1|9|C|1380
7NWH|1|9|G|1381
7NWH|1|9|A|1382
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain AA
- 40S_SA_C domain-containing protein
- Chain CC
- 40S ribosomal protein S2
- Chain DD
- 40S ribosomal protein S3
- Chain RR
- 40S ribosomal protein S17
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