IL_7NWH_236
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 7NWH|1|9|U|1397
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_236 not in the Motif Atlas
- Geometric match to IL_5J7L_283
- Geometric discrepancy: 0.3177
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7NWH|1|9|C|1395
7NWH|1|9|A|1396
7NWH|1|9|U|1397
7NWH|1|9|G|1398
7NWH|1|9|C|1399
*
7NWH|1|9|G|1447
7NWH|1|9|A|1448
7NWH|1|9|G|1449
7NWH|1|9|G|1450
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain QQ
- Ribosomal protein S16
- Chain RR
- 40S ribosomal protein S17
- Chain UU
- 40S ribosomal protein S20
- Chain gg
- Epididymis tissue sperm binding protein Li 3a
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