IL_7NWH_239

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_239 not in the Motif Atlas

Geometric match to IL_3GM7_002

Geometric discrepancy: 0.1943

The information below is about IL_3GM7_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7NWH|1|9|A|1537
7NWH|1|9|C|1538
7NWH|1|9|U|1539
*
7NWH|1|9|A|1594
7NWH|1|9|U|1595
7NWH|1|9|U|1596

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain QQ

Ribosomal protein S16

Chain SS

40S ribosomal protein uS13

Chain TT

eS19

Chain ZZ

40S ribosomal protein S25