IL_7NWH_243

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7NWH|1|9|C|1701, 7NWH|1|9|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_243 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.3233

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7NWH|1|9|C|1700
7NWH|1|9|C|1701
7NWH|1|9|G|1702
*
7NWH|1|9|C|1833
7NWH|1|9|A|1834
7NWH|1|9|A|1835
7NWH|1|9|G|1836

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain OO

uS11

Chain aa

40S ribosomal protein S26

Chain hh

mRNA