IL_7NWH_258

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUCC*GGCCCG

Length

10 nucleotides

Bulged bases

7NWH|1|5|C|1214, 7NWH|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_258 not in the Motif Atlas

Geometric match to IL_8C3A_109

Geometric discrepancy: 0.3632

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7NWH|1|5|C|1082
7NWH|1|5|U|1083
7NWH|1|5|C|1084
7NWH|1|5|C|1085
*
7NWH|1|5|G|1212
7NWH|1|5|G|1213
7NWH|1|5|C|1214
7NWH|1|5|C|1215
7NWH|1|5|C|1216
7NWH|1|5|G|1217

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain F

uL30

Chain b

eL29