IL_7NWH_259
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 7NWH|1|5|G|1625, 7NWH|1|5|A|1637, 7NWH|1|5|A|1638, 7NWH|1|5|U|1639
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_259 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.2099
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7NWH|1|5|G|1624
7NWH|1|5|G|1625
7NWH|1|5|G|1626
*
7NWH|1|5|U|1636
7NWH|1|5|A|1637
7NWH|1|5|A|1638
7NWH|1|5|U|1639
7NWH|1|5|C|1640
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain P
- uL22
- Chain j
- Ribosomal protein L37
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