IL_7NWH_264
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UGCUC*GGGUAAA
- Length
- 12 nucleotides
- Bulged bases
- 7NWH|1|5|A|3746, 7NWH|1|5|A|3747
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_264 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3214
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
7NWH|1|5|U|3704
7NWH|1|5|G|3705
7NWH|1|5|C|3706
7NWH|1|5|U|3707
7NWH|1|5|C|3708
*
7NWH|1|5|G|3742
7NWH|1|5|G|3743
7NWH|1|5|G|3744
7NWH|1|5|U|3745
7NWH|1|5|A|3746
7NWH|1|5|A|3747
7NWH|1|5|A|3748
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 60S ribosomal protein L8
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