IL_7NWI_008

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

7NWI|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_008 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.3026

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7NWI|1|5|C|118
7NWI|1|5|G|119
7NWI|1|5|A|120
7NWI|1|5|A|121
*
7NWI|1|5|U|152
7NWI|1|5|G|153

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain h

uL29