IL_7NWI_020
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GGUC*GCUAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_020 not in the Motif Atlas
- Geometric match to IL_6AZ4_001
- Geometric discrepancy: 0.3465
- The information below is about IL_6AZ4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69145.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7NWI|1|5|G|443
7NWI|1|5|G|444
7NWI|1|5|U|445
7NWI|1|5|C|446
*
7NWI|1|5|G|1300
7NWI|1|5|C|1301
7NWI|1|5|U|1302
7NWI|1|5|A|1303
7NWI|1|5|C|1304
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain e
- eL32
- Chain f
- eL33
Coloring options: