IL_7NWI_021

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7NWI|1|5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_021 not in the Motif Atlas

Geometric match to IL_5TBW_002

Geometric discrepancy: 0.3785

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7NWI|1|5|C|459
7NWI|1|5|C|460
*
7NWI|1|5|G|695
7NWI|1|5|C|696
7NWI|1|5|G|697

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

eL28