IL_7NWI_032

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

7NWI|1|5|U|513, 7NWI|1|5|U|514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_032 not in the Motif Atlas

Geometric match to IL_6IV9_001

Geometric discrepancy: 0.2639

The information below is about IL_6IV9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7NWI|1|5|U|512
7NWI|1|5|U|513
7NWI|1|5|U|514
7NWI|1|5|C|515
*
7NWI|1|5|G|646
7NWI|1|5|G|647

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain L

L13