IL_7NWI_075
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 7NWI|1|5|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_075 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.112
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7NWI|1|5|U|1905
7NWI|1|5|U|1906
7NWI|1|5|A|1907
7NWI|1|5|A|1908
7NWI|1|5|G|1909
*
7NWI|1|5|C|2067
7NWI|1|5|C|2068
7NWI|1|5|A|2069
7NWI|1|5|U|2070
7NWI|1|5|A|2071
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- uL30
- Chain Q
- Ribosomal_L18e/L15P domain-containing protein
- Chain e
- eL32
- Chain f
- eL33
Coloring options: