IL_7NWI_119

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7NWI|1|5|A|3785, 7NWI|1|5|C|3791, 7NWI|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_119 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.2014

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7NWI|1|5|C|3781
7NWI|1|5|C|3782
7NWI|1|5|A|3783
7NWI|1|5|A|3784
7NWI|1|5|A|3785
7NWI|1|5|U|3786
7NWI|1|5|G|3787
7NWI|1|5|C|3788
7NWI|1|5|C|3789
7NWI|1|5|U|3790
7NWI|1|5|C|3791
7NWI|1|5|G|3792
*
7NWI|1|5|C|3808
7NWI|1|5|G|3809
7NWI|1|5|C|3810
7NWI|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41