IL_7NWI_129

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_129 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2304

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7NWI|1|5|C|4243
7NWI|1|5|A|4244
7NWI|1|5|G|4245
*
7NWI|1|5|C|4263
7NWI|1|5|G|4264
7NWI|1|5|U|4265
7NWI|1|5|G|4266
7NWI|1|5|G|4267

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

60S ribosomal protein L5

Chain J

Ribosomal protein L11

Chain T

eL21