IL_7NWI_155

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUCC*GUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_155 not in the Motif Atlas

Geometric match to IL_7A0S_102

Geometric discrepancy: 0.3762

The information below is about IL_7A0S_102

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform with intercalation

Motif group

IL_58502.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7NWI|1|5|G|4768
7NWI|1|5|G|4769
7NWI|1|5|U|4770
7NWI|1|5|C|4771
7NWI|1|5|C|4772
*
7NWI|1|5|G|4863
7NWI|1|5|U|4864
7NWI|1|5|C|4865
7NWI|1|5|C|4866

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain H

L9

Chain O

L13a