IL_7NWI_159

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_159 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.2197

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7NWI|1|5|U|4972
7NWI|1|5|U|4973
7NWI|1|5|C|4974
7NWI|1|5|G|4975
*
7NWI|1|5|C|4983
7NWI|1|5|C|4984
7NWI|1|5|U|4985
7NWI|1|5|G|4986

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain B

uL3

Chain P

L17

Chain d

eL31