IL_7NWI_185
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 7NWI|1|9|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_185 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1698
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NWI|1|9|G|145
7NWI|1|9|G|146
7NWI|1|9|A|147
7NWI|1|9|U|148
7NWI|1|9|A|149
7NWI|1|9|A|150
7NWI|1|9|C|151
*
7NWI|1|9|G|167
7NWI|1|9|C|168
7NWI|1|9|U|169
7NWI|1|9|A|170
7NWI|1|9|A|171
7NWI|1|9|U|172
7NWI|1|9|A|173
7NWI|1|9|C|174
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain GG
- 40S ribosomal protein S6
- Chain YY
- 40S ribosomal protein S24
Coloring options: