IL_7NWI_191
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 7NWI|1|9|U|368, 7NWI|1|9|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_191 not in the Motif Atlas
- Geometric match to IL_4ERD_001
- Geometric discrepancy: 0.2609
- The information below is about IL_4ERD_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
7NWI|1|9|U|366
7NWI|1|9|U|367
7NWI|1|9|U|368
7NWI|1|9|C|369
7NWI|1|9|G|370
7NWI|1|9|A|371
*
7NWI|1|9|U|393
7NWI|1|9|G|394
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain II
- 40S ribosomal protein S8
- Chain LL
- 40S ribosomal protein S11
- Chain R
- 60S ribosomal protein L19
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