IL_7NWI_196

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_196 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1264

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7NWI|1|9|C|491
7NWI|1|9|C|492
7NWI|1|9|A|493
7NWI|1|9|C|494
7NWI|1|9|U|495
*
7NWI|1|9|A|508
7NWI|1|9|G|509

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

S4

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24