IL_7NWI_198

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

7NWI|1|9|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_198 not in the Motif Atlas

Geometric match to IL_5ED1_002

Geometric discrepancy: 0.1547

The information below is about IL_5ED1_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7NWI|1|9|A|528
7NWI|1|9|A|529
7NWI|1|9|U|530
*
7NWI|1|9|A|554
7NWI|1|9|A|555
7NWI|1|9|U|556
7NWI|1|9|U|557

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain ee

40S ribosomal protein S30