IL_7NWI_210

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_210 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.1898

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

7NWI|1|9|A|802
7NWI|1|9|C|803
*
7NWI|1|9|G|860
7NWI|1|9|A|861
7NWI|1|9|A|862
7NWI|1|9|U|863

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

ribosomal protein eS7

Chain LL

40S ribosomal protein S11

Chain WW

Ribosomal protein S15a

Chain XX

Ribosomal protein S23