IL_7NWI_214

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCGC*GAG

Length

7 nucleotides

Bulged bases

7NWI|1|9|C|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_214 not in the Motif Atlas

Homologous match to IL_4V88_427

Geometric discrepancy: 0.4524

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7NWI|1|9|C|876
7NWI|1|9|C|877
7NWI|1|9|G|878
7NWI|1|9|C|879
*
7NWI|1|9|G|907
7NWI|1|9|A|908
7NWI|1|9|G|909

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19