IL_7NWI_217

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_217 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.319

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7NWI|1|9|C|927
7NWI|1|9|G|928
7NWI|1|9|G|929
7NWI|1|9|C|930
7NWI|1|9|C|931
*
7NWI|1|9|G|1010
7NWI|1|9|A|1011
7NWI|1|9|A|1012
7NWI|1|9|U|1013
7NWI|1|9|G|1014

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

ribosomal protein uS15

Chain bb

40S ribosomal protein S27