IL_7NWI_220
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 7NWI|1|9|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_220 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.2046
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7NWI|1|9|G|952
7NWI|1|9|C|953
7NWI|1|9|U|954
7NWI|1|9|A|955
7NWI|1|9|G|956
*
7NWI|1|9|C|967
7NWI|1|9|U|968
7NWI|1|9|U|969
7NWI|1|9|G|970
7NWI|1|9|G|971
7NWI|1|9|A|972
7NWI|1|9|C|973
7NWI|1|9|C|974
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- 40S ribosomal protein S3a
- Chain OO
- S14
Coloring options: