IL_7NWI_237

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7NWI|1|9|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_237 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2013

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7NWI|1|9|C|1337
7NWI|1|9|G|1338
*
7NWI|1|9|C|1488
7NWI|1|9|A|1489
7NWI|1|9|G|1490

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain DD

40S ribosomal protein S3

Chain UU

Ribosomal_S10 domain-containing protein

Chain dd

ribosomal protein uS14