IL_7NWI_240
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 7NWI|1|9|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_240 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.3272
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7NWI|1|9|C|1395
7NWI|1|9|A|1396
7NWI|1|9|U|1397
7NWI|1|9|G|1398
7NWI|1|9|C|1399
*
7NWI|1|9|G|1447
7NWI|1|9|A|1448
7NWI|1|9|G|1449
7NWI|1|9|G|1450
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain QQ
- Rps16 protein
- Chain RR
- S17
- Chain UU
- Ribosomal_S10 domain-containing protein
- Chain gg
- ribosomal protein RACK1
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