IL_7NWI_249

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7NWI|1|9|C|1701, 7NWI|1|9|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_249 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2397

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7NWI|1|9|C|1700
7NWI|1|9|C|1701
7NWI|1|9|G|1702
*
7NWI|1|9|C|1833
7NWI|1|9|A|1834
7NWI|1|9|A|1835
7NWI|1|9|G|1836

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain K

mRNA

Chain aa

40S ribosomal protein S26