IL_7NWI_252
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 7NWI|1|9|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_252 not in the Motif Atlas
- Geometric match to IL_1CSL_001
- Geometric discrepancy: 0.2874
- The information below is about IL_1CSL_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59580.1
- Basepair signature
- cWW-cHW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NWI|1|9|C|1708
7NWI|1|9|G|1709
7NWI|1|9|C|1710
7NWI|1|9|U|1711
*
7NWI|1|9|A|1822
7NWI|1|9|A|1823
7NWI|1|9|A|1824
7NWI|1|9|A|1825
7NWI|1|9|G|1826
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- mRNA
- Chain XX
- Ribosomal protein S23
- Chain n
- 60s ribosomal protein l41
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