IL_7NWI_274

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7NWI|1|5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_274 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1656

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7NWI|1|5|G|4405
7NWI|1|5|U|4406
7NWI|1|5|G|4407
*
7NWI|1|5|U|4435
7NWI|1|5|U|4436
7NWI|1|5|U|4437
7NWI|1|5|U|4438
7NWI|1|5|U|4439

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain B

uL3

Chain I

60S ribosomal protein L10