IL_7NWT_052

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

7NWT|1|1|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_052 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.0999

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7NWT|1|1|G|1432
7NWT|1|1|A|1433
7NWT|1|1|A|1434
7NWT|1|1|G|1435
*
7NWT|1|1|C|1557
7NWT|1|1|C|1558
7NWT|1|1|U|1559
7NWT|1|1|G|1560
7NWT|1|1|C|1561

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2