IL_7NWT_120

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7NWT|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_120 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1056

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7NWT|1|2|G|147
7NWT|1|2|G|148
7NWT|1|2|A|149
7NWT|1|2|U|150
7NWT|1|2|A|151
7NWT|1|2|A|152
7NWT|1|2|C|153
*
7NWT|1|2|G|168
7NWT|1|2|C|169
7NWT|1|2|U|170
7NWT|1|2|A|171
7NWT|1|2|A|172
7NWT|1|2|U|173
7NWT|1|2|A|174
7NWT|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20