IL_7NWT_122

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7NWT|1|2|U|244, 7NWT|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_122 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0747

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7NWT|1|2|G|242
7NWT|1|2|A|243
7NWT|1|2|U|244
7NWT|1|2|U|245
7NWT|1|2|A|246
7NWT|1|2|G|247
*
7NWT|1|2|C|277
7NWT|1|2|G|278
7NWT|1|2|A|279
7NWT|1|2|C|280
7NWT|1|2|G|281
7NWT|1|2|A|282
7NWT|1|2|U|283
7NWT|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17