IL_7NWT_131

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_131 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1132

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7NWT|1|2|G|450
7NWT|1|2|A|451
7NWT|1|2|A|452
7NWT|1|2|G|453
7NWT|1|2|G|454
7NWT|1|2|G|455
*
7NWT|1|2|C|477
7NWT|1|2|A|478
7NWT|1|2|U|479
7NWT|1|2|U|480
7NWT|1|2|G|481
7NWT|1|2|A|482
7NWT|1|2|C|483

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain AA

Protein 2A

Chain u

30S ribosomal protein S16