IL_7NWT_146

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_146 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0688

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7NWT|1|2|G|887
7NWT|1|2|G|888
7NWT|1|2|A|889
7NWT|1|2|G|890
7NWT|1|2|U|891
7NWT|1|2|A|892
7NWT|1|2|C|893
7NWT|1|2|G|894
*
7NWT|1|2|U|905
7NWT|1|2|A|906
7NWT|1|2|A|907
7NWT|1|2|A|908
7NWT|1|2|A|909
7NWT|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12