IL_7NWT_157

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

7NWT|1|2|C|1200, 7NWT|1|2|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_157 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.0942

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7NWT|1|2|G|1057
7NWT|1|2|G|1058
*
7NWT|1|2|U|1199
7NWT|1|2|C|1200
7NWT|1|2|A|1201
7NWT|1|2|U|1202
7NWT|1|2|C|1203

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain o

30S ribosomal protein S10

Chain s

30S ribosomal protein S14