IL_7NWT_183

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0525

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7NWT|1|1|U|1851
7NWT|1|1|U|1852
7NWT|1|1|A|1853
7NWT|1|1|A|1854
7NWT|1|1|U|1855
7NWT|1|1|U|1856
7NWT|1|1|G|1857
7NWT|1|1|A|1858
7NWT|1|1|U|1859
7NWT|1|1|G|1860
*
7NWT|1|1|U|1882
7NWT|1|1|U|1883
7NWT|1|1|G|1884
7NWT|1|1|A|1885
7NWT|1|1|U|1886
7NWT|1|1|C|1887
7NWT|1|1|G|1888
7NWT|1|1|A|1889
7NWT|1|1|A|1890
7NWT|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains