IL_7O1A_039

3D structure

PDB id

7O1A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O1A_039 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0752

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7O1A|1|AA|G|887
7O1A|1|AA|G|888
7O1A|1|AA|A|889
7O1A|1|AA|G|890
7O1A|1|AA|U|891
7O1A|1|AA|A|892
7O1A|1|AA|C|893
7O1A|1|AA|G|894
*
7O1A|1|AA|U|905
7O1A|1|AA|A|906
7O1A|1|AA|A|907
7O1A|1|AA|A|908
7O1A|1|AA|A|909
7O1A|1|AA|C|910

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12