3D structure

PDB id
7O1A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O1A_073 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.0656
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

7O1A|1|BA|C|239
7O1A|1|BA|C|240
7O1A|1|BA|A|241
7O1A|1|BA|G|242
7O1A|1|BA|U|243
7O1A|1|BA|A|244
7O1A|1|BA|G|245
*
7O1A|1|BA|C|253
7O1A|1|BA|G|254
7O1A|1|BA|A|255
7O1A|1|BA|A|256
7O1A|1|BA|C|257
7O1A|1|BA|G|258

Current chains

Chain BA
Ribosomal RNA 23S

Nearby chains

Chain B3
50S ribosomal protein L35
Chain BL
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2602 s
Application loaded.