IL_7O1A_099

3D structure

PDB id

7O1A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O1A_099 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.0747

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7O1A|1|BA|U|1004
7O1A|1|BA|C|1005
7O1A|1|BA|C|1006
7O1A|1|BA|C|1007
7O1A|1|BA|A|1008
7O1A|1|BA|A|1009
7O1A|1|BA|A|1010
7O1A|1|BA|G|1011
*
7O1A|1|BA|C|1150
7O1A|1|BA|A|1151

Current chains

Chain BA

Ribosomal RNA 23S

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20