IL_7O1A_187

3D structure

PDB id

7O1A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

7O1A|1|AA|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O1A_187 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2551

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7O1A|1|AA|5MC|1407
7O1A|1|AA|A|1408
7O1A|1|AA|C|1409
*
7O1A|1|AA|G|1491
7O1A|1|AA|A|1492
7O1A|1|AA|A|1493
7O1A|1|AA|G|1494

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12

Chain B7

mRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA