IL_7O1C_024

3D structure

PDB id

7O1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUA*UUGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O1C_024 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2753

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7O1C|1|AA|G|455
7O1C|1|AA|A|456
7O1C|1|AA|G|457
7O1C|1|AA|U|458
7O1C|1|AA|A|459
*
7O1C|1|AA|U|472
7O1C|1|AA|U|473
7O1C|1|AA|G|474
7O1C|1|AA|C|475
7O1C|1|AA|U|476

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AP

30S ribosomal protein S16