IL_7O5B_012
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CAUUAG*CGACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 7O5B|1|A|U|252, 7O5B|1|A|C|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_012 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.152
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7O5B|1|A|C|250
7O5B|1|A|A|251
7O5B|1|A|U|252
7O5B|1|A|U|253
7O5B|1|A|A|254
7O5B|1|A|G|255
*
7O5B|1|A|C|285
7O5B|1|A|G|286
7O5B|1|A|A|287
7O5B|1|A|C|288
7O5B|1|A|G|289
7O5B|1|A|A|290
7O5B|1|A|U|291
7O5B|1|A|G|292
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
Coloring options: