IL_7O5B_019
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGAAG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_019 not in the Motif Atlas
- Geometric match to IL_6CZR_130
- Geometric discrepancy: 0.2702
- The information below is about IL_6CZR_130
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.3
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O5B|1|A|G|454
7O5B|1|A|G|455
7O5B|1|A|A|456
7O5B|1|A|A|457
7O5B|1|A|G|458
*
7O5B|1|A|C|492
7O5B|1|A|G|493
7O5B|1|A|G|494
7O5B|1|A|U|495
7O5B|1|A|A|496
7O5B|1|A|C|497
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain P
- 30S ribosomal protein S16
Coloring options: