IL_7O5B_038
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 7O5B|1|A|C|944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_038 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.2199
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
7O5B|1|A|G|943
7O5B|1|A|C|944
7O5B|1|A|A|945
*
7O5B|1|A|U|1389
7O5B|1|A|U|1390
7O5B|1|A|C|1391
7O5B|1|A|C|1392
7O5B|1|A|C|1393
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain U
- Transfer RNA; tRNA
- Chain V
- mRNA
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